I tried that and it didn't work. Looks like I had to restart FileBot to make it use the saved matchings.
It Does work now. Thanks for the help.

It's not a specific case it rather a general problem. lets say I have a file x.mkv and that file is the first Episode of The Flash (2014). How do I need to name the file so that FileBot will always Match it correctly? Naming it "The Flash (2014) S01E01" wont work. It will still ask me for matching ...

For example "The Flash" It always asks me what version of the Flash it is the 2014 or 1990 version. The same for Doctor Who with 2005 and 1963. There are also other cases where it's not just a matter of the year.

When I scan my files it keeps asking me to match the same pairs. Is there anything that I could add to the name to prevent this. Maybe the ID of the Episode/Movie?