When running echo $ENV:PATH variables such as %USERPROFILE% should not be in the output. [...] You can use %USERPROFILE% in the "Edit Environment Variable" dialog in the Windows settings, but when using %PATH% it should always appear in it's resolved form. [...] Either the Java installer ...

PS C:\Users\Joey> echo $ENV:PATH C:\ProgramData\Oracle\Java\javapath;C:\Python27\;C:\Python27\Scripts;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\Intel\OpenCL SDK\3.0\bin\x86;C:\Program Files (x86)\Intel\OpenCL SDK\3.0\b...

The Windows Store will make sure that these things are added to the path. Commands like "filebot" and "filebot.launcher" will just work. If you're not using a system call (%PATH% is ignored) to call filebot and not CMD or PowerShell, you may need explicitly have cmd do the call....