I have a downloads folder which filebot copies the files from, once they have finished seeding those files are deleted, was never a problem before as filebot would skip the files that had already been copied, and still process the rest.

so while T:\TV Shows\Dark Matter\Season 03\Dark Matter ...

Recently filebot has started skipping all other episodes if one of the files already exists in the target directory. ( it used to work , i haven't changed anything)

Argument[0]: F:\downloaded
Ignore hidden: F:\downloaded\desktop.ini
Input: F:\downloaded\Dark.Matter.S03E05.1080p.HEVC.x265-MeGusta ...